Instructions and file definitions
by Arthur Taylor & Amy Haase,
as of 2/13/2012

=======================================
==== Step One (Run the model)      ==== 
=======================================

INPUT:

runSlosh.bat            : Script to run SLOSH
2005Rita_egm3.trk       : Rita best track -
                          Intention is to have hours 1 to 86 versus 
                          hours 39 to 86
../basinDir/egm3dta     : Gulf of Mexico Basin
../basinDir/ebasins.dta : eliptical basin grid definitions 

RUN (on a PC):

# Run the model (on a PC)
1) cd ./working
2) ../../SLOSH-3.97-foia-20120120/slosh/bin/sloshDos.exe -basin egm3 -bsnDir ../../basinDir -trk ../2005Rita_egm3.trk -rex 2005Rita_egm3.rex -env 2005Rita_egm3.env

# Runtime information
#    OS:               Windows 7
#    Compiler:         MinGW 3.4.2
#    Type of Computer: Intel.... 
#    Wall Clock:       X seconds  

# Clean up temporary files
3) rm egm3.llx 2005Rita_egm3.env 

# Test to see if the results changed.
4) diff 2005Rita_egm3.rex ../2005Rita_egm3.rex

=======================================
==== Step Two (Convert .rex files) ==== 
=======================================

INPUT:

2005Rita_egm3noTide.rex : Rexfile with Rita2005_egm3 run.
rita_egm3_ij.txt        : Stations of interest.

RUN (on a linux machine):


=======================================
==== RESULTS                       ==== 
=======================================

OUTPUT:

00_dir.ncml              : Appears to be used for NOMADs with NetCDF files
rita_egm3.spatial.nc     : Spatial NetCDF as a field.
                           (Rita best track, with tide, in EGM3)
rita_egm3.timeseries.nc  : Time series NetCDF
rita_egm3.timeseries.txt : Txt form of time series